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yzq
16 August 2009 @ 12:36 am
(Science, alcohol, and late-night movies do not mix)

Zombies are a popular figure in pop culture/entertainment and they are usually portrayed as being brought about through an outbreak or epidemic. Consequently, we model a zombie attack, using biological assumptions based on popular zombie movies.

...

The key difference between the models presented here and other models of infectious disease is that the dead can come back to life. Clearly, this is an unlikely scenario if taken literally, but possible real-life applications may include allegiance to political parties, or diseases with a dormant infection.

This is, perhaps unsurprisingly, the first mathematical analysis of an outbreak of zombie infection.

[A] zombie outbreak is likely to lead to the collapse of civilisation, unless it is dealt with quickly. While aggressive quarantine may contain the epidemic, or a cure may lead to coexistence of humans and zombies, the most effective way to contain the rise of the undead is to hit hard and hit often. As seen in the movies, it is imperative that zombies are dealt with quickly, or else we are all in a great deal of trouble.


- Munz, P, Hudea, I, Imad, J & Smith, R.J., When Zombies Attack!: Mathematical Modelling of an Outbreak of Zombie Infection, Infectious Disease Modelling Research Progress (2009).
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yzq
21 September 2008 @ 01:05 pm
Described here are the synthetic details en route to an array of 2-nm-tall anthropomorphic molecules in monomeric, dimeric, and polymeric form. These anthropomorphic figures are called, as a class, NanoPutians. Using tools of chemical synthesis, the ultimate in designed miniaturization can be attained while preparing the most widely recognized structures: those that resemble humans.

- Chanteau, S.H. & Tour, J.M., Synthesis of Anthropomorphic Molecules, J. Org. Chem. (2003).


more chem =p )
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yzq
31 May 2008 @ 03:43 am

Gas! Gas! Quick, boys! - An ecstasy of fumbling,
Fitting the clumsy helmets just in time;
But someone still was yelling out and stumbling,
And flound'ring like a man in fire or lime...
Dim, through the misty panes and thick green light,
As under a green sea, I saw him drowning.
In all my dreams, before my helpless sight,
He plunges at me, guttering, choking, drowning.

- Wilfred Owen, Dulce et Decorum Est




I swear this baby gives a kick a gazillion times more powerful than that from any chili* you've ever tasted. Charging into a room filled with tear gas and madly scrambling to put on our gas masks while our eyes teared enough to force them shut, and enough mucus ran down noses to flood our masks. The euphoria felt upon leaving the room, and having the fresh wind clear our faces, can only be understood by those who've been humbled by the numbing spiciness of a hot chili, and then come back for more. Has addiction to tear gas been documented? (Kidding =p)

* - Excepting maybe the Naga Jolokia and Habanero

As an added bonus, synthesis is a short and sweet one-step reaction between 2-chlorobenzaldehyde and malononitrile, catalysed by a weak amine base. <3




chem )
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yzq
19 November 2007 @ 02:34 am
Figured an anecdote from Feynman on bio might be appropriate 5.5 hours before bio paper 3.

I had always had some interest in biology, and the [biology] guys talked about very interesting things. Some of them invited to come to a course they were going to have in cell physiology.

...

The next paper elected for me [to present] was by Adrian and Bronk. They demonstrated that nerve impulses were sharp, single-pulse phenomena. They had done experiments with cats in which they had measured voltages on nerves.
I began to read the paper. It kept talking about extensors and flexors, the gastrocnemius muscle, and so on. This and that muscle were named, but I hadn't the foggiest idea of where they were located in relation to the nerves tor to the cat. So I went to the librarian in the biology section and asked her if she could find me a map of the cat.
"A map of the cat, sir?" she asked, horrified. "You mean a zoological chart!" From then on there were rumors about some dumb biology graduate student who was looking for a "map of the cat."

When it came time for me to give my talk on the subject, I started off by drawing an outline of the cat and began to name the various muscles.
The other students in the class interrupt me: "We know all that!"
"Oh," I say, "you do? Then no wonder I can catch up with you so fast after you've had four years of biology." They had wasted all their time memorizing stuff like that, when it could be looked up in fifteen minutes.

- Richard Feynman, Surely You're Joking, Mr. Feynman!


Slacky physics students have probably been gaming the whole weekend away while the rest of us were cramming for bio :( blym, cow, peng and weilong crashed last fri after chem mcq and ended up watching a movie (too lame to name) and playing worms / swat 4 lol. Next time gimme more warning so I can exercise my internet connection and dvd burner to get better movies for watching on a tv instead of a lousy computer monitor =p And install wc3.

So I did some slacking of my own too =p Rediscovered my itch for game programming while cramming error- and typo-filled econs notes (inspiration comes from weird places) and coded a rudimentary rubik's cube game last thurs. Took 12 hours, but I started from my old game engine so it wasn't created from scratch. Coming up with a control scheme that's intuitive and yet allows for speedy manipulation of the cube is hard. The mouse is out if you want to achieve any sort of speed. So with my clunky keyboard control scheme I ended up taking 30 mins to solve the cube on the computer. Depending on how much time I have before NS enlistment (haven't gotten the date yet wth) I might be able to work on some other stuff.

Never thought I'd like electronic music but Discotech is so addictive!
Attack, we keep it on the dance floor.
Discotech, meet me at the back door...
 
 
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yzq
24 September 2007 @ 11:21 pm
A while ago I posted a suggested synthesis of carvone. That 15-step scheme looks unnecessarily convoluted and long-winded in hindsight, and since then I've come up with a more elegant suggestion here. 8-)

I swear hope not to degenerate into jargon =p If you're free to read let me know if you understand.

Scheme )

Explanation )
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yzq
29 July 2007 @ 01:58 am
Argentum :)

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yzq
27 June 2007 @ 01:03 am
For anyone interested, two free public lectures coming up next monday:
(see http://mrs.org.sg/conference/icmat2007/public-lectures/)

Date: 2 July 2007
Time: 6.00-8.00pm
Venue: University Cultural Centre, NUS

Professor K Barry SHARPLESS
Nobel Laureate in Chemistry
The Scripps Research Institute (TSRI), La Jolla, California, USA
Lecture Title: Chemistry and the "KISS Principle"

My lecture will consider the chemists’ love affair with reactivity. In particular, I will discuss how much more ‘new reactivity’ we think we need and how, by seeing the known in new light, we might find creating new properties and functions much easier than we had ever imagined possible. As an example, chemical orthogonality can enable us to create “Trojan Horse” molecules using Nature’s own biochemical tools without Her ever noticing.


Professor Claude COHEN-TANNOUDJI
Nobel Laureate in Physics
College de France and Laboratoire Kastier Brossel, FRANCE
Lecture Title: Atoms and Photons

Einstein was the first physicist to introduce the idea that the radiation field is quantized and consists of quanta, called now photons, having an energy hn and a linear momentum hn / c. He extended also the new statistics introduced by Bose for a gas of photons to a perfect gas of atoms, predicting in this way a new spectacular phenomenon, Bose-Einstein condensation.

We will review in this paper a few modern extensions of these ideas. First, multiphoton ionization, where an atom is ionized, not by the absorption of a single photon, as in the first description of the photoelectric effect given by Einstein in 1905, but by the absorption of several photons. We will then show how resonant exchanges of linear momentum between atoms and photons can give rise to huge radiative forces exerted by laser beams on atoms, allowing one to cool these atoms to extremely low temperatures. One of the most spectacular applications of the ultracold atoms obtained by these methods is the observation of Bose-Einstein condensation in ultracold atomic gases. New fascinating perspectives opened by these gaseous condensates will be briefly discussed.
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yzq
26 March 2007 @ 02:13 am
(I probably look like a chem nut for posting this, but wth.)


Carvone is a chiral natural terpenoid found in essential oils (especially spearmint oil). It is also found on page 1 of the HCI C2 chemistry lecture test 1 :)

Carvone is also obtained from natural sources and not synthesised in the laboratory, but well it's a nice problem to tackle.

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For the uninitiated, retrosynthesis is a method of working backwards from the final chemical product to reach the starting chemicals and identify what reactions are necessary to get to the product. The final synthetic procedure normally involves more steps because certain functional groups must be "protected" from reacting with some reagents, before being "deprotected" to recover the original functional group.

In the retrosynthetic analysis, I've used red lines to indicate bonds that are being "disconnected". The => arrows indicate a disconnection step and are not actual reactions, which are indicated with -> arrows.
In the synthesis section, red denotes new bonds / groups being introduced into the molecule.

Discussion )

Will blog abt non-chem stuff next time.
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yzq
10 November 2006 @ 12:38 am
Been working on the chemistry science fair project the past few weeks with [info]bensing, [info]yongzi, choon boon and liang en. Basically our project involves playing around with chitosan (a polymer of glucosamine - the thing that GNC seems to sell for dunno what health reasons) and modifying it to adsorb metal ions.

This is chitosan:


We're trying to cross-link the chitosan monomers / molecules with all sorts of other chemicals, such as esters. Cross-linking is to join two chitosan molecules to each other with another molecule as a bridge. It's somewhat like how cellulose molecules are cross-linked with H-bonds. In the process, we introduce new functional groups into the compound (e.g. amides, carbonyl), which supposedly help to adsorb the metal ions. So we'll experiment with different methods of modifying chitosan, and see which creates the best product for removing the metals.

What we've been working on for now has been synthesising a diester (diethyl adipate), to cross-link chitosan. On diethyl adipate, the two ester groups react with the amine groups on 2 separate chitosan molecules to give 2 amide groups. This joins the 2 chitosan molecules together.

Diethyl adipate:


But first we need diethyl adipate, which we can synthesise from ethanol and adipic acid (hexanedioic acid). It's a textbook example of ester synthesis, but us being noobs at practical organic chem, we've taken 3 lab sessions so far to actually make it.

Stripped of detail, the protocol looks like this:
1) Measure out and dump ethanol, adipic acid, toluene (solvent) and conc sulphuric acid (catalyst) in a flask.
2) Heat.
3) Distill out the water and some of the excess alcohol and toluene.
4) Remove the water from the distillate and dump it back in the flask.
5) Heat.
6) Distill off the excess alcohol and solvent and throw it away.
7) Distill off the ester (our product!) at low pressure.

Round 1

Theory is always much harder in practice. The first session had us figuring out what the equipment was supposed to be used for, and how to connect it all together. The lame thing was that we had to walk all the way from the college lab to the high school's new research centre just for a stupid weighing balance because the labs were moving over there. =.= We weren't exactly 100% sure of our setup, and when all the reagents are just colourless liquids it's quite difficult to say whether everything's working or not :p We didn't have any funnels (!) to pour our chemicals, so it got spilt outside the flask... and at the end I was quite worried about contamination. The distillation didn't really work out, because all the liquid was just condensing in the flask and flowing back in, instead of condensing in the condenser (lol) and flowing to the collecting flask. So we stoned for over 2 hours waiting for nothing to distill, playing Risk on my laptop in the meantime. And at the end at 7pm when we were packing up we realised the stuff in the reaction flask had turned green o_O wth?

Lessons for the next time:
1) Use a funnel (=p)
2) Use an insulating cloth so that the vapour doesn't just condense in the reaction flask.
3) Use a better holder for the thermometer since the one we used didn't seem to be sealed.
4) Use a water pump in a basin with water instead of running tap water (waste water!)
5) Cool the running water with ice so that the condenser works better.

Round 2

Here's the distillation setup on our 2nd try. Paiseh for the poor photo quality because I was just using my handphone camera.

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There's an oil bath on the hot plate on the right. We need an oil bath because the reaction needs lots of heat and the ester only distills above 100°C (i.e. cannot use water bath). There's a round-bottomed flask with 2 necks in the oil bath. This is connected on its left to a water-cooled condenser, which leads to a collecting flask filled with potassium carbonate.

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The thermometer on the extreme right is measuring the temperature of the solution in the flask, while the thermometer on the extreme left is measuring the temperature of the vapour that's about to into the condenser. The thermometer in the middle is supposed to measure the oil bath temperaure but since it's so pok and can measure up to 110°C we couldn't really use it.

The cloth tied around the neck of the flask is supposed to insulate it, so that any liquid that's boiled won't condense so easily. The vapour is then supposed to go to the left, into the water-cooled condenser, where it contacts the cool surface and condenses and flows further to the extreme left into our collecting flask. The black tubes are connected to a water pump in the green basin on the left. The green basin contains water with ice.

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This shows the part of the condenser nearest the reaction flask. It's blurry but you can see liquid condensing on the sides of the inner tube. Seeing the first drops of condensate appearing and flowing down was very relieving and almost exhilarating. The last time we spent 2 hours waiting for nothing to come out, when the textbook says you should expect 2-3 drops of condensate per *second*.

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Finally, here's the collection flask. It's filled with potassium carbonate, which is supposed to dry the distillate by removing any water. This is important because the reaction is driven to completion by removing water. After filtering away the carbonate, we dump the filtrate (which contains ethanol and solvent, but without water) back in to continue the reaction.

Then we heat the reaction mixture again, before doing the final distillation. We do this at reduced pressure (20 mmHg, which is really low) by connecting a vacuum pump to our setup to lower the pressure, before heating the mixture to distill it. Reducing the pressure lowers the boiling point, which is important since very high temperatures will supposedly either degrade the product or make the experiment just plain inconvenient. The excess ethanol and solvent came out pretty quickly, so all that was left was our ester and excess adipic acid. At first it was unnerving because the stuff inside was starting to turn brown again :s But then we raised the temperature some more and the vapour temperature quickly started rising to the expected 134°C, and our ester product finally came out :D Plus, it was sweet-smelling, as esters are supposed to be. We got 12.1g of the stuff, which is about 60% yield. Poor compared to the textbook's 96% expected yield, but we consider that good for the first time :)
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yzq
24 January 2006 @ 11:54 pm
Nitrogen and hydrogen are made to suffer unnecessarily for the production of ammonia. Le Chatelier's Principle states that if a chemical system in dynamic equilibrium is kicked hard enough, it will react by shifting to another equilibrium. Such inhumane methods are incorporated in the ubiquitous Haber process employed for the production of ammonia, whereby nitrogen and hydrogen are subject to temperatures and pressures high enough to kill any ordinary human, solely for the purpose of producing ammonia. Such treatment is tantamount to extortion and is unconstitutional, as the Eighth Amendment specifically forbids "cruel and unusual punishments".

Nitrogen and hydrogen move that they be allowed the freedom to react at their natural rate and produce as much ammonia as they wish. Altering this natural balance is equivalent to Big Brother family planning. Utilization of the Haber process must be prohibited, and all existing Haber chemical plants must cease operations with immediate effect.

Legal precedents include Sulphur Dioxide & Oxygen v. Contact Process.

Done entirely out of boredom and lameness. Originally inspired by a Scientific American column. Modifications welcome :D
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